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2. Yuan Daojun*, Liang Shaoguang*, Lin Zhongxu and Zhang Xianlong.(2012).In silico comparative analysis of EST-SSRs in three cotton genomes. African Journal of Biotechnology 11,13269-13371.(co-first author)
3. Yuan Daojun, Tu Lili and Zhang Xianlong.(2011).Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L.. PLoS ONE 6,e22758.
4. Yang Xiyan*, Wang Lichen*, Yuan Daojun, Lindsey Keith and Zhang Xianlong.(2013).Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. Journal of Experimental Botany 64,1521-1536.
5. Li Ximei, Yuan Daojun, Zhang Jinfa, Lin Zhongxu and Zhang Xianlong.(2013).Genetic Mapping and Characteristics of Genes Specifically or Preferentially Expressed during Fiber Development in Cotton. PLoS ONE 8,e54444.
6. Min Ling, Zhu Longfu, Tu Lili, Deng Fenglin, Yuan Daojun and Zhang Xianlong.(2013).Cotton GhCKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase. Plant Journal 75，823-35.
7. Liu Chuanxiang, Yuan Daojun, Zhang Xianlong and Lin Zhongxu.(2013).Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP. Journal of Genetics 1-7.
8. Li Ximei, Yuan Daojun, Wang Hantao, Chen Xuemei, Wang Bin, Lin Zhongxu and Zhang Xianlong.(2012).Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP. Genome 55,459-470.
9. Yang Xiyan, Zhang Xianlong, Yuan Daojun, Jin Fangyan, Zhang Yunchao and Xu Jiao.(2012).Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. BMC Plant Biology 12,110.
10. Yu Yu, Yuan Daojun, Liang Shaoguang, Li Ximei, Wang Xiaqing, Lin Zhongxu and Zhang Xianlong.(2011).Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC Genomics 12,15.
11. Hu Lisong, Yang Xiyan, Yuan Daojun, Zeng Fanchang and Zhang Xianlong.(2011).GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. Plant Biotechnol J 9,1038-48.
12. Zhu Longfu, He Xin, Yuan Daojun, Xu Lian, Xu Li, Tu Lili, Shen Guoxin, Zhang Hong and Zhang Xianlong.(2011).Genome-Wide Identification of Genes Responsive to ABA and Cold/Salt Stresses in Gossypium hirsutum by Data-Mining and Expression Pattern Analysis. Agricultural Sciences in China 10,499-508.
13. Xu Li, Zhu Longfu, Tu Lili, Liu Linlin, Yuan Daojun, Jin Li, Long Lu and Zhang Xianlong.(2011).Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. Journal of Experimental Botany 62,5607-21.
14. Lin Zhongxu, Yuan Daojun and Zhang Xianlong.(2010).Mapped SSR markers unevenly distributed on the cotton chromosomes. Frontiers of Agriculture in China 4,257-264.
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